PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KXZ44188.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
Family C3H
Protein Properties Length: 769aa    MW: 78002.3 Da    PI: 7.4654
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KXZ44188.1genomeGPGRPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.7e-0696121126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 yk +lC+   +  tC+ Gd+C++aH 
  KXZ44188.1  96 YKAVLCPLVKAKKTCPLGDSCSYAHN 121
                 88999**999999************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.3E-792122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.65E-693125IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-495122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.96795123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-5128158IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.409131155IPR000571Zinc finger, CCCH-type
SMARTSM003562.1131154IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 769 aa     Download sequence    Send to blast
MLGLAPGQPV PGAAGGTKLC HLLADEALLR RLSGSASSGP EDCVSLLRSL NLPDSFWTDE  60
FKVVPCAKTY SHKWTLCPCA HIGETARRRC PRAINYKAVL CPLVKAKKTC PLGDSCSYAH  120
NVFEHWLHPS RYKTRLCSFG RNCNRSICFF AHSAEELRCV PVTDEEKGDE SGYLLQLLMA  180
QESGLLPPSA LQPPAVSPLM PGLMPDLNSA FQQALSCPLP PSNRPSVNGL PDATPLISGR  240
PSVNGLPDLM SPGLGDHSAA VLAARASMSG IPDAPSAMMI PSRHSLSGLP DPSGLLAGRT  300
SLNGLQDVGL GAMGGHAMMR GRPSLNGIND PANMLLSMSA QHSMQRALSS ELSGTMHAAA  360
MQRALSSDLG SAPFHAAAAA SAMQRAMSSD LGAAQLNAAA AAANAAFNSV NGVAAAHAAA  420
MERAMSRELA GGIASPLQSA AAAALERAYS GREGTIPGVA GVGLPGPNGS GGAMAMSLER  480
VLTNSRSMNS SVSRDLSLGH TASINSVESD SLIQMRSGLG GMGHFGGSAA SAGPASMGPG  540
GNRPMGHMGY EPGHDPHAPP RLSDPGGGNF QALPMALQSP QQPRPQHAGA AAEAAGLLGT  600
DLAGLESLLP LVNNALASGA LALPGGGGSG AAAAAAARAV RRSNSGTSGR VVSPPLHDAG  660
GYGSPTHSGT LTPMSPNSAG GGADPGVGPD AATLNQQHQL RLQTSANSPP PAPDGMAQEA  720
MGRSAEGCGA IDQAYLHGLV ARLQDQGVNK EQLVSSLSQL LAQLMSVGN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002955400.11e-173hypothetical protein VOLCADRAFT_106802
TrEMBLA0A150G2W90.0A0A150G2W9_GONPE; Uncharacterized protein
STRINGEDP097941e-100(Chlamydomonas reinhardtii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.16e-36CCCH-type zinc finger protein with ARM repeat domain